Relation To Real Experiments
The relation to real experiments can be quite complex, as can be seen again from an example going back to Albert Einstein. In 1935, with two coworkers, he published a famous paper on a newly-created subject called later the EPR effect (EPR paradox). In this paper, starting from certain philosophical assumptions, on the basis of a rigorous analysis of a certain, complicated, but in the meantime assertedly realizable model, he came to the conclusion that quantum mechanics should be described as "incomplete". Niels Bohr asserted a refutation of Einstein's analysis immediately, and his view prevailed. After some decades, it was asserted that feasible experiments could prove the error of the EPR paper. These experiments tested the Bell inequalities published in 1964 in a purely theoretical paper. The above-mentioned EPR philosophical starting assumptions were considered to be falsified by empirical fact (e.g. by the optical real experiments of Alain Aspect).
Thus thought experiments belong to a theoretical discipline, usually to theoretical physics, but often to theoretical philosophy. In any case, it must be distinguished from a real experiment, which belongs naturally to the experimental discipline and has "the final decision on true or not true", at least in physics.
Read more about this topic: Thought Experiment
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