Potential Problems
Instrumental variables estimates are generally inconsistent if the instruments are correlated with the error term in the equation of interest. Another problem is caused by the selection of "weak" instruments, instruments that are poor predictors of the endogenous question predictor in the first-stage equation. In this case, the prediction of the question predictor by the instrument will be poor and the predicted values will have very little variation. Consequently, they are unlikely to have much success in predicting the ultimate outcome when they are used to replace the question predictor in the second-stage equation.
In the context of the smoking and health example discussed above, tobacco taxes are weak instruments for smoking if smoking status is largely unresponsive to changes in taxes. If higher taxes do not induce people to quit smoking (or not start smoking), then variation in tax rates tells us nothing about the effect of smoking on health. If taxes affect health through channels other than through their effect on smoking, then the instruments are invalid and the instrumental variables approach may yield misleading results. For example, places and times with relatively health-conscious populations may both implement high tobacco taxes and exhibit better health even holding smoking rates constant, so we would observe a correlation between health and tobacco taxes even if it were the case that smoking has no effect on health. In this case, we would be mistaken to infer a causal effect of smoking on health from the observed correlation between tobacco taxes and health.
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