In 1999, Rhino released The Fischer King, a two-CD package comprising 100 tracks and a 20-page booklet, which sold out within weeks. The limited-edition album comprises his entire Rhino catalogue, including the albums with Barnes and Barnes and Wildmania (1977), along with his duet with Clooney. Fischer also appears as guest vocalist with the noise band Smegma on their album Sings Popular Songs.
In 1998 Robert Williams (drummer) (former Captain Beefheart) "Date with the Devils Daughter" album includes Hello Robert, which consists of messages that Larry "Wild Man" Fischer left on Robert Williams phone.
In October 2004, Fischer appeared on ABC-TV's late-night talk/comedy show, Jimmy Kimmel Live!. He sang "Monkeys vs. Donkeys" while tapping on a backwards acoustic guitar, and also sat for a chat with the host, wherein he explained what it means to have "the pep" (i.e., when the spirit is in him and he's singing happily).
In 2005, Josh Rubin and Jeremy Lubin, collectively known as The Ubin Twinz premiered their documentary about Wild Man Fischer, entitled Derailroaded: Inside The Mind Of Wild Man Fischer, at the SXSW Film Festival in Austin, Texas. An Evening With Wild Man Fischer remains unreleased on CD. The awareness brought to Fischer by Derailroaded did, however, bring all three Rhino albums back in print on CD through Collectors' Choice Music.
Fischer made his final appearance on August 16, 2006, at the Trunk Space in Phoenix, Arizona.
He was mentioned in Thomas Pynchon's 2009 novel Inherent Vice (pg. 155).
He was mentioned by Eric Clapton in the opening of the 2010 Crossroads Guitar Festival, "Wild Man Fischer lives...", in reply to Bill Murray's introduction.
Fischer died in Los Angeles, on June 16, 2011 after heart problems.
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