Administrators
At present, 11 administrators have taken turns in the university's presidency. Currently the president is elected by the Board of Trustees from among its ranks, with general concurrence obtained from the College of Bishops of the Philippine Central Conference of the United Methodist Church in the Philippines.
| Seq. | Name of President | Term of Office | Known For |
|---|---|---|---|
| 1 | Dionisio Deista Alejandro | 1946-1947 | The first Filipino Bishop of the United Methodist Church of the Philippines, elected in 1944. |
| 2 | Carlos Mañacop, Sr. | 1947-1952 | Founder of WU-P. |
| 3 | Roxy Lefforge | 1952-1954 | Also became the executive dean of the Philippine Christian College in Manila. |
| 4 | Asuncion Perez | 1954-1967 | First Filipino woman to hold a cabinet position as Social Welfare secretary and administrator from 1948 to 1953, as well as one of the original board of trustees of the Philippine Rural Reconstruction Movement. |
| 5 | Fidel P. Galang | 1967-1970 | |
| 6 | Gloria D. Lacson | 1970-1993 | Former dean of the Mary Johnston College of Nursing of the then Philippine Christian College and a retired Colonel of the Nursing Corps of the Armed Forces of the Philippines. |
| 7 | Emmanuel G. Cleto | 1993-1994; 1994-2001 (OIC) | Former judge and commissioner of the Civil Service Commission. Acted as WU-P's officer-in-charge from December 4, 1993 to March 20, 1994. Appointed as acting president by WU-P Board of Trustees in 1994 to 2001. |
| 8 | Zenaida Lumba | 2001-2004 | Former president of Harris Memorial College. |
| 9 | Guillermo T. Maglaya | 2004-2009 | Former National Bureau of Investigation and Ninoy Aquino International Airport administrator. Acted as officer-in-charge in 2004 and formally installed as president in 2005. |
| 10 | Manuel G. Palomo | 2009-2011 | Businessman; former college and high school instructor in the university from the 80s. |
| 11 | Pacifico B. Aniag | 2011–present | Was member of the Board of Trustees during previous administrations; board member of the neighboring province of Bulacan. |
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