Role of U6 SnRNA
Base-pair specificity of the U6 snRNA allows the U6 snRNP to bind tightly to the U4 snRNA and loosely to the U5 snRNA of a triple-snRNP during the initial phase of the splicing reaction. As the reaction progresses, the U6 snRNA is unzipped from U4 and binds to the U2 snRNA. At each stage of this reaction, the U6 snRNA secondary structure undergoes extensive conformational changes.
The association of U6 snRNA with the 5' end of the intron via base-pairing during the splicing reaction occurs prior to the formation of the lariat (or lasso-shaped) intermediate, and is required for the splicing process to proceed. The association of U6 snRNP with U2 snRNP via base-pairing forms the U6-U2 complex, a structure that comprises the active site of the spliceosome.
Read more about this topic: U6 Spliceosomal RNA
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