Phytoplasma - Taxonomy

Taxonomy

Phytoplasmas are mollicutes and within this group belong to the monophyletic order Acholeplasmatales. In 1992 the Subcommittee on the Taxonomy of Mollicutes proposed the use of the name Phytoplasma in place of the use of the term MLO (Mycoplasma-like organism) "for reference to the phytopathogenic mollicutes". In 2004 the genus name Phytoplasma was adopted and is currently at Candidatus status which is used for bacteria that can not be cultured. It's taxonomy is complicated by the fact that it can not be cultured and thus methods normally used for classification of prokaryotes are not possible. Phytoplasma taxonomic groups are based on differences in the fragment sizes produced by the restriction digest of the 16S rRNA gene sequence (Called RFLP) or by comparison of DNA sequences from the 16s/23s spacer regions. There is some disagreement over how many taxonomic groups the phytoplasmas fall into, recent work involving computer simulated restriction digests of the 16Sr gene suggest there may be up to 28 groups whereas other papers argue for less groups, but more sub-groups. Each group includes at least one Ca. Phytoplasma species, characterised by distinctive biological, phytopathological and genetic properties. The table below summaries some of the major taxonomic groups and the candidatus species that belong in them.

16Sr Group Group Name Species Reference
16SrI Aster yellows Ca. Phytoplasma asteris
Ca. Phytoplasma japonicum
16SrII Peanut witch's broom Ca. Phytoplasma aurantifolia
16SrIII X-disease Ca. Phytoplasma pruni
16SrIV Coconut lethal yellowing Ca. Phytoplasma palmae
Ca. Phytoplasma castaneae
Ca. Phytoplasma cocosnigeriae
16SrV Elm yellows Ca. Phytoplasma ziziphi
Ca. Phytoplasma vitis
Ca. Phytoplasma ulmi
16SrVI Clover proliferation Ca. Phytoplasma trifolii
16SrVII Ash yellows Ca. Phytoplasma fraxini
16SrVIII Luffa witch's-broom Ca. Phytoplasma luffae
16SrIX Pidgeon pea witch's broom Ca. Phytoplasma phoenicium
16SrX Apple proliferation Ca. Phytoplasma mali
Ca. Phytoplasma pyri
Ca. Phytoplasma prunorum
Ca. Phytoplasma spartii
Ca. Phytoplasma rhamnii
Ca. Phytoplasma allocasuarinae
16SrXI Rice Yellow Dwarf
Sugarcane Grassy Shoot Disease (SCGS)
Ca. Phytoplasma oryzae
16SrXII Stolbur Ca. Phytoplasma solani
Ca. Phytoplasma australiense
16SrXIII Mexican periwinkle virescence Undefined
16SrXIV Bermuda white leaf Ca. Phytoplasma cynodontis
16SrXV Hibiscus witch's-broom Ca. Phytoplasma brasiliense

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