- S6-14-03 virus
- SA 11 simian virus
- SA 15
- SA2 virus
- SA6 virus
- SA8 virus
- Saaremaa virus
- Sabia virus
- Sabio virus
- Sabiá virus
- Sabo virus
- Saboya virus
- Sabulodes caberata GV
- Sacbrood virus
- Saccharomyces 20S RNA narnavirus
- Saccharomyces 23S RNA narnavirus
- Saccharomyces cerevisiae Ty1 virus
- Saccharomyces cerevisiae Ty2 virus
- Saccharomyces cerevisiae Ty3 virus
- Saccharomyces cerevisiae Ty4 virus
- Saccharomyces cerevisiae Ty5 virus
- Saccharomyces cerevisiae virus L-A
- Saccharomyces cerevisiae virus L-BC (La)
- Saccharomyces cerevisiae virus LBC
- Sagiyama virus
- Saguaro cactus virus
- Saguinine herpesvirus 1
- Saimiriine herpesvirus 1
- Saimiriine herpesvirus 2
- Sainpaulia leaf necrosis virus
- Saint-Floris virus
- Saint Abb's Head virus
- Sakhalin virus
- Sal Vieja virus
- Salanga virus
- Salangapox virus
- Salehabad virus
- Salivary gland virus
- Salmon pancreas disease virus
- Salmonella Fels-2
- Salmonella phage epsilon15
- Salmonella phage FelixO1
- Salmonella phage HK620
- Salmonella phage ST64T
- Salmonella SopEphi
- Salmonid herpesvirus 1
- Salmonid herpesvirus 2
- Salmonid herpesvirus 3
- Salmonis virus
- Sambucus vein clearing virus
- Samia cynthia NPV
- Samia pryeri NPV
- Samia ricini NPV
- Sammons' Opuntia virus
- Sammons's Opuntia virus
- San Juan virus
- San Miguel sealion virus
- San Perlita virus
- SanAngelo virus
- Sand rat nuclear inclusion agents
- Sandfly fever Naples virus
- Sandfly fever Naples virus
- Sandfly fever Sicilian virus
- Sandjimba virus
- Sango virus
- Santa Rosa virus
- Santarem virus
- Santee-Cooper ranavirus
- Santosai temperate virus
- Sapphire II virus
- Sapporo virus
- Saraca virus
- Sarcochilus virus Y
- Sarracenia purpurea virus
- SARS virus
- Satellite virus
- Sathuperi virus
- Satsuma dwarf virus
- Saturnia pavonia virus
- Saturnia pyri NPV
- Saumarez Reef virus
- Sawgrass virus
- Scallion mosaic virus
- Sceliodes cordalis NPV
- Schefflera ringspot virus
- Schistocera gregaria entomopoxvirus 'O'
- Schizosaccharomyces pombe Tf1 virus
- Schizosaccharomyces pombe Tf2 virus
- Schlumbergera virus X
- Schmallenberg virus
- Sciaphila duplex GV
- Scirpophaga incertulas NPV
- Sciurid herpesvirus
- Sciurid herpesvirus 2
- Sclerotinia sclerotiorum debilitation-associated RNA virus
- Scoliopteryx libatFix NPV
- Scopelodes contracta NPV
- Scopelodes venosa NPV
- Scopula subpunctaria NPV
- Scotogramma trifolii GV
- Scotogramma trifolu NPV
- Scotophilus bat coronavirus 512
- Scrophularia mottle virus
- SDAV (sialodacryoadenitis virus)
- Sealpox virus
- Selenephera lunigera NPV
- Selepa celtis GV
- Seletar virus
- Selidosema suavis NPV
- Semidonta biloba NPV
- Semiothisa sexmaculata GV
- Semliki Forest virus
- Semliki Forest Virus
- Sena Madureira virus
- Sendai virus
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- Seneca Valley virus
- Senecio yellow mosaic virus
- Seoul virus
- Sepik virus
- Serra do Navio virus
- Serrano golden mosaic virus
- Sesame yellow mosaic virus
- Sesamia calamistis NPV
- Sesamia cretica GV
- Sesamia inferens NPV
- Sesamia nonagrioides GV
- Sesbania mosaic virus
- Setaria streak virus
- Setora nitens virus
- Severe acute respiratory syndrome-related coronavirus
- Shallot latent virus
- Shallot virus X
- Shallot yellow stripe virus
- Shamonda virus
- Shark River virus
- Sheep associated malignant catarrhal fever
- Sheep papillomavirus
- Sheep pulmonary adenomatosis associated herpesvirus
- Sheeppox virus
- Shiant Islands virus
- Shigella phage Sf6
- Shimoni bat virus
- Shokwe virus
- Shope fibroma virus
- Shope papilloma virus
- Shuni virus
- Siamese cobra herpesvirus
- Sibine fusca densovirus
- Sida golden mosaic Costa Rica virus
- Sida golden mosaic Florida virus
- Sida golden mosaic Honduras virus
- Sida golden mosaic virus
- Sida golden yellow vein virus
- Sida leaf curl virus
- Sida micrantha mosaic virus
- Sida mottle virus
- Sida yellow mosaic China virus
- Sida yellow mosaic virus
- Sida yellow mosaic Yucatan virus
- Sida yellow vein Madurai virus
- Sida yellow vein Vietnam virus
- Sida yellow vein virus
- Siegesbeckia yellow vein Guangxi virus
- Siegesbeckia yellow vein virus
- Sigma virus
- Sigma viruses
- Sigmapapillomavirus 1
- Sikte water-borne virus
- Silverwater virus
- Simbu virus
- Simian adenovirus A
- Simian adenoviruses 1 to 27
- Simian agent virus 12
- Simian enterovirus 1 to 18
- Simian enterovirus A
- Simian foamy virus
- Simian hemorrhagic fever virus
- Simian hepatitis A virus
- Simian human immunodeficiency virus
- Simian immunodeficiency virus
- Simian parainfluenza virus
- Simian parvovirus
- Simian rotavirus SA11
- Simian sapelovirus
- Simian sarcoma virus
- Simian T cell lymphotrophic virus
- Simian type D virus 1
- Simian vancella herpesvirus
- Simian virus
- Simian virus 10
- Simian virus 12
- Simian virus 40
- Simian virus 41
- Simplexvirus
- Simulium vittatum densovirus
- Sin Nombre virus
- Sindbis virus
- Sint1em's onion latent virus
- Sint-Jan's onion latent virus
- Sitke waterborne virus
- Sixgun city virus
- Skunkpox virus
- Slow bee paralysis virus
- Smallpox virus
- Smelt reovirus
- Smerinthus ocellata NPV
- Smithiantha virus
- Snake adenovirus A
- Snakehead rhabdovirus
- Snakehead virus
- Snowshoe hare virus
- Snyder-Theilen feline sarcoma virus
- Sobemovirus
- Sofyn virus
- Soil-borne cereal mosaic virus
- Soil-borne wheat mosaic virus
- Sokoluk virus
- Solanum apical leaf curl virus
- Solanum nodiflorum mottle virus
- Solanum nodiflorum mottle virus satellite
- Solanum tuberosum Tst1 virus
- Solanurn yellows virus
- Soldado virus
- Solenopsis invicta virus-1
- Somerville virus 4
- Sonchus mottle virus
- Sonchus virus
- Sonchus yellow net virus
- Sorghum chlorotic spot virus
- Sorghum mosaic virus
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- Sorghum virus
- Sororoca virus
- Soursop yellow blotch virus
- South African cassava mosaic virus
- South American hemorrhagic fever viruses
- South River virus
- SouthAfrican passiflora virus
- Southern bean mosaic virus
- Southern cowpea mosaic virus
- Southern elephant seal virus
- Southern potato latent virus
- Sowbane mosaic virus
- Sowthistle yellow vein virus
- Soybean blistering mosaic virus
- Soybean chlorotic mottle virus
- Soybean crinkle leaf virus
- Soybean dwarf virus
- Soybean mosaic virus
- Soybean yellow mottle mosaic virus
- SPAr-2317 virus
- Sparganothis pettitana NPV
- Sparrowpox virus
- Spartina mottle virus
- Spectacled caimanpox virus
- SPH 114202 virus
- Sphaeropsis sapinea RNA virus 1
- Sphaeropsis sapinea RNA virus 2
- Sphenicid herpesvirus 1
- Sphinx ligustri NPV
- Spider monkey herpesvirus
- Spilanthes yellow vein virus
- Spilarctia subcarnea NPV
- Spilonota ocellana NPV
- Spilosoma lubricipeda NPV
- Spinach curly top virus
- Spinach latent virus
- Spinach temperate virus
- Spiraea yellow leaf spot virus
- Spiranthes mosaic virus 3
- Spiroplasma phage 1
- Spiroplasma phage 1-aa
- Spiroplasma phage 1-C74
- Spiroplasma phage 1-KC3
- Spiroplasma phage 1-R8A2B
- Spiroplasma phage 1-S102
- Spiroplasma phage 1-T78
- Spiroplasma phage 4
- Spiroplasma phage aa
- Spiroplasma phage C1 /TS2
- Spodoptera exempta cypovirus 5
- Spodoptera exempta cypovirus 8
- Spodoptera exempta cypovirus 11
- Spodoptera exempta cypovirus 12
- Spodoptera exempta NPV
- Spodoptera exemptacypovirus 3
- Spodoptera exigua cypovirus 11
- Spodoptera exigua GV
- Spodoptera exigua MNPV
- Spodoptera exigua multiple nucleopolyhedrovirus
- Spodoptera exigua NPV
- Spodoptera frugiperda ascovirus 1a
- Spodoptera frugiperda GV
- Spodoptera frugiperda MNPV
- Spodoptera frugiperda multiple nucleopolyhedrovirus
- Spodoptera frugiperda NPV
- Spodoptera latifascia NPV
- Spodoptera littoralis
- Spodoptera littoralis NPV
- Spodoptera littoralis nucleopolyhedrovirus
- Spodoptera litura GV
- Spodoptera litura NPV
- Spodoptera litura nucleopolyhedrovirus
- Spodoptera mauritia NPV
- Spodoptera ornithogalli NPV
- Spondweni virus
- Spring beauty latent virus
- Spring viraemia of carp virus
- Spring viremia of carp virus
- Spumavirus
- Squash leaf curl China virus
- Squash leaf curl Philippines virus
- Squash leaf curl virus
- Squash leaf curl Yunnan virus
- Squash mild leaf curl virus
- Squash mosaic virus
- Squash vein yellowing virus
- Squirrel fibroma virus
- Squirrel monkey herpesvirus
- Squirrel monkey retrovirus
- Squirrelpox virus
- SR-11 virus
- Sri Lankan cassava mosaic virus
- Sri Lankan passionfruit mottle virus
- Sripur virus
- SSV 1 virus group
- St Croix River virus
- St. Louis encephalitis virus
- StAbbs Head virus
- Stachytarpheta leaf curl virus
- Staphylococcus phage 3A
- Staphylococcus phage 44A HJD
- Staphylococcus phage 44AHJD
- Staphylococcus phage 77
- Staphylococcus phage 107
- Staphylococcus phage 187
- Staphylococcus phage 2848A
- Staphylococcus phage B11-M15
- Staphylococcus phage G1
- Staphylococcus phage K
- Staphylococcus phage Twort
- Starling circovirus
- Starlingpox virus
- Statice virus Y, P
- STLV (simian T lymphotropic virus) type I
- STLV (simian T lymphotropic virus) type II
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- STLV (simian T lymphotropic virus) type III
- Stocky prune virus
- Stomatitis papulosa virus
- Stratford virus
- Strawberry chlorotic fleck-associated virus
- Strawberry crinkle virus
- Strawberry latent ringspot virus
- Strawberry latent ringspot virus satellite
- Strawberry mild yellow edge virus
- Strawberry mild yellow edge-associated virus
- Strawberry mottle virus
- Strawberry necrotic shock virus
- Strawberry pallidosis-associated virus
- Strawberry pseudo mild yellow edge virus
- Strawberry vein banding virus
- Streptocarpus flower break virus
- Streptococcus phage 2BV
- Streptococcus phage 24
- Streptococcus phage 182
- Streptococcus phage A25
- Streptococcus phage C1
- Streptococcus phage Cp-1
- Streptococcus phage CP-1
- Streptococcus phage Cvir
- Streptococcus phage fD8
- Streptococcus phage H39
- Streptococcus phage PE1
- Streptococcus phage VD13
- Streptomyces phage phiC31
- Strigid herpesvirus 1
- Striped bass reovirus
- Striped jack nervous necrosis virus
- Striped Jack nervous necrosis virus
- Stump-tailed macaque virus
- Sturgeon adenovirus A
- Submaxillary virus
- Subterranean clover mottle virus
- Subterranean clover mottle virus satellite
- Subterranean clover red leaf virus
- Subterranean clover stunt virus
- Sudan ebolavirus
- Sugarcane bacilliform IM virus
- Sugarcane bacilliform MO virus
- Sugarcane bacilliform virus
- Sugarcane mild mosaic virus
- Sugarcane mosaic virus
- Sugarcane streak Egypt virus
- Sugarcane streak mosaic virus
- Sugarcane streak Reunion virus
- Sugarcane streak virus
- Sugarcane striate mosaic-associated virus
- Sugarcane yellow leaf virus
- Suid alphaherpesvirus 1
- Suid herpesvirus 1
- Suid herpesvirus 2
- Suid herpesvirus 3
- Suid herpesvirus 4
- Suid herpesvirus 5
- Suipoxvirus
- Sulfolobus islandicus filamentous virus
- Sulfolobus islandicus rod-shaped virus 1
- Sulfolobus islandicus rod-shaped virus 2
- Sulfolobus newzealandicus droplet-shaped virus
- Sulfolobus spindle-shaped virus 1
- Sulfolobus turreted icosahedral virus
- Sulfolobus virus
- Sulfolobus virus 1
- Sun-hemp mosaic virus
- Sunday Canyon virus
- Sunflower chlorotic mottle virus
- Sunflower crinkle virus
- Sunflower mosaic virus
- Sunflower rugose mosaic virus
- Sunflower yellow blotch virus
- Sunflower yellow ringspot virus
- Sunn-hemp mosaic virus
- Swamp fever virus
- Swan circovirus
- Sweet clover necrotic mosaic virus
- Sweet potato A virus
- Sweet potato chlorotic fleck virus
- Sweet potato chlorotic leafspot virus
- Sweet potato chlorotic stunt virus
- Sweet potato collusive virus
- Sweet potato feathery mottle virus
- Sweet potato internal cork virus
- Sweet potato latent virus
- Sweet potato leaf curl Canary virus
- Sweet potato leaf curl China virus
- Sweet potato leaf curl Georgia virus
- Sweet potato leaf curl Lanzarote virus
- Sweet potato leaf curl Spain virus
- Sweet potato leaf curl virus
- Sweet potato leaf speckling virus
- Sweet potato mild mottle virus
- Sweet potato mild speckling virus
- Sweet potato pakakuy virus
- Sweet potato russet crack virus
- Sweet potato vein clearing virus
- Sweet potato vein mosaic virus
- Sweet potato virus 2
- Sweet potato virus C
- Sweet potato virus G
- Sweet potato yellow dwarf virus
- Sweetwater Branch virus
- Swine cytomegalovirus
- Swine infertility and respiratory syndrome virus
- Swinepox virus
- Swiss mouse leukemia virus
- Sword bean distortion mosaic virus
- Synaxis jubararia NPV
- Synaxis pallulata NPV
- Synechococcus phage P60
- Synechococcus phage syn5
- Synetaeris tenuifemur ichnovirus
- Synetaeris tenuifemur virus
- Syngrapha selecta NPV
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