Threading/fold Recognition
| Name | Method | Description | Link |
|---|---|---|---|
| RaptorX | Remote template detection, single-template and multi-template threading, totally different from and much better than the old program RAPTOR designed by the same group | Webserver with job manager, automatically updated fold library | download server |
| 3D-PSSM | 3D-1D sequence profiling (replaced by Phyre) | Webserver | server |
| Bioingbu | Evolutionary information recognition | Webserver | server |
| HHpred | Template detection, alignment, 3D modeling | Interactive webserver with help facility | server download article |
| I-TASSER | Combination of ab initio folding and threading methods | Structural and function predictions | server
download |
| LOOPP | Multiple methods | Webserver | server |
| mGenTHREADER/GenTHREADER | Sequence profile and predicted secondary structure | Webserver | main page |
| MUSTER | profile-profile alignment | Webserver | server
download |
| Phyre and Phyre2 | Remote template detection, alignment, 3D modeling, multi-templates, ab initio | Webserver with job manager, automatically updated fold library, genome searching and other facilities | server |
| RAPTOR | Integer programming based fold recognition | Free demo | download articles |
| Selvita Protein Modeling Platform | Package of tools for protein modeling | Free demo, interactive webserver and standalone program including: 3D threading and flexible 3d threading | Home page |
| SUPERFAMILY | Hidden Markov modeling | Webserver/standalone | main page |
| SPARKSx/SP series | 3D structure modeling by Fold recognition according to Sequence profiles and structural profiles | Webserver | Server |
Read more about this topic: List Of Protein Structure Prediction Software
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Of evening rain,
Unravelled from the tumbling main,
And threading the eye of a yellow star:—
So many times do I love again.”
—Thomas Lovell Beddoes (1803–1849)
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and we do not say why your wild-haired wife has fled
or that my father opened like a walnut and then was dead.
Your palms fold over me like knees. Love is the only use.”
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“That the world can be improved and yet must be celebrated as it is are contradictions. The beginning of maturity may be the recognition that both are true.”
—William Stott (b. 1940)