Applications
| Name | Description | OS1 | Site | Citation |
|---|---|---|---|---|
| BayesTrees | A program designed to display, analyse and manipulate samples of trees, in particular Bayesian samples. | W | ||
| Dendroscope | An interactive viewer for large phylogenetic trees and networks | All | ||
| ETE | A Python toolkit that assists in the visualization of custom phylogenetic tree images (exports as PNG, PDF and SVG). | All | ||
| FigTree | Modern treeviewer with coloring and collapsing | All | ||
| Geneious Pro | All-in-one sequence analysis, phylogenetics and molecular cloning application with modern treeviewer | All | ||
| JEvTrace | A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace and other phylogeny inspired analysis. | All | ||
| MultiDendrograms | Application to calculate and plot phylogenetic trees | All | ||
| NJplot | Interactive tree plotter, re-roots, exports as PDF | All | ||
| TreeDyn | Very powerful open-source software for tree manipulation and annotation allowing incorporation of meta information | All | ||
| TreeGraph 2 | Open-source tree editor with numerous editing and formatting operations including combining different phylogenetic analyses | All | ||
| TreeView | Classic treeviewing software that is very highly cited | All | ||
| UGENE | An opensource visual interface for Phylip 3.6 package | All |
1 "All" refers to Microsoft Windows, Apple OSX and Linux; L=Linux, M=Apple Mac, W=Microsoft Windows
Read more about this topic: List Of Phylogenetic Tree Visualization Software