E
- Eber: Iltis class gunboat, launched 6 June 1903, commissioned 15 August 1903, burned 26 October 1917
- Eider: Isles class (Type 139) trawler, former Royal Navy HMS Flint
- Eisbär: Eisvogel class (Type 721) icebreaker, decommissioned 1997
- Eismöve: Schnellboot fast attack craft, commissioned 1956—1967
- Eisvogel: Eisvogel class (Type 721) icebreaker
- Elbe: Rhein class (Type 401) tender
- Elbe: Elbe class (Type 404) replenishment ship
- Elbing: Pillau class light cruiser, launched 1914
- Elsaß: 13,000 ton Braunschweig class battleship, launched 1903
- Elster: Jaguar (Type 140) fast attack craft, commissioned 1960—1974
- Elster: Tiger class (Type 148) fast attack craft, decommissioned
- Emden: 3,700 ton Dresden class light cruiser, launched 1908
- Emden: Königsberg class light cruiser, launched 1916
- Emden: 6,000 ton unique light cruiser, launched 1925
- Emden: Köln class (Type 120) frigate, commissioned 1961 to 1983
- Emden: Bremen class (Type 122) frigate
- Ensdorf: Ensdorf class (Type 352) minesweeper
- Erfurt: Braunschweig class (Type 130) corvette, planned
- Erich Giese: 2,230 ton Type 1934A destroyer
- Erich Koellner: 2,230 ton Type 1934A destroyer
- Erich Steinbrinck: 2,230 ton Type 1934A destroyer
- Eversand: Bottsand class oil recovery ship, commissioned 1984
Read more about this topic: List Of Naval Ships Of Germany