Finals
| Season | Winner | Runner-up | Score | |
|---|---|---|---|---|
| 1938 | Sport | TJK | 1–1 |
2–1 |
| 1939 | TJK | Kalev Tallinn | 4–1 | |
| 1992–93 | Nikol | Norma | 0–0 |
|
| 1993–94 | Norma | Trans | 4–1 | |
| 1994–95 | Flora | Lantana/Marlekor | 2–0 | |
| 1995–96 | Sadam | EP Jõhvi | 2–0 | |
| 1996–97 | Sadam | Lantana | 3–2 | |
| 1997–98 | Flora | Lantana | 3–2 | |
| 1998–99 | Levadia* | Tulevik | 3–2 | |
| 1999–00 | Levadia* | Tulevik | 2–0 | |
| 2000–01 | Trans | Flora | 1–0 |
|
| 2001–02 | Levadia II** | Levadia* | 2–0 | |
| 2002–03 | TVMK | Flora | 2–2 |
|
| 2003–04 | Levadia | TVMK | 3–0 | |
| 2004–05 | Levadia | TVMK | 1–0 | |
| 2005–06 | TVMK | Flora | 1–0 | |
| 2006–07 | Levadia | Trans | 3–0 | |
| 2007–08 | Flora | Maag Tammeka | 3–1 | |
| 2008–09 | Flora | Kalju | 0–0 |
|
| 2009–10 | Levadia | Flora | 3–0 | |
| 2010–11 | Flora | Trans | 2–0 | |
| 2011–12 | Levadia | Trans | 3–0 | |
* As Levadia Maardu
** As Levadia Tallinn
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