The endosymbiotic theory argues that mitochondria, plastids (e.g. chloroplasts), and possibly other organelles of eukaryotic cells, originate through symbiosis between multiple microorganisms. According to this theory, certain organelles originated as free-living bacteria that were taken inside another cell as endosymbionts. Mitochondria developed from proteobacteria (in particular, Rickettsiales, the SAR11 clade, or close relatives) and chloroplasts from cyanobacteria.
Read more about Endosymbiotic Theory: History, From Endosymbionts To Organelles, Evidence, Secondary Endosymbiosis, Extensions
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“Everything to which we concede existence is a posit from the standpoint of a description of the theory-building process, and simultaneously real from the standpoint of the theory that is being built. Nor let us look down on the standpoint of the theory as make-believe; for we can never do better than occupy the standpoint of some theory or other, the best we can muster at the time.”
—Willard Van Orman Quine (b. 1908)