CellML - History

History

The CellML language grew from a need to share models of cardiac cell dynamics among researchers at a number of sites across the world. The original working group formed in 1998 consisted of David Bullivant, Warren Hedley, and Poul Nielsen; all three were at that time members of the Department of Engineering Science at the University of Auckland. The language was an application of the XML specification developed by the World Wide Web Consortium - the decision to use XML was based on late 1998 recommendations from Warren Hedley and André (David) Nickerson. Existing XML-based languages were leveraged to describe the mathematics (content MathML), metadata (RDF), and links between resources (XLink). The CellML working group first became aware of the SBML effort in late 2000, when Warren Hedley attended the 2nd workshop on Software Platforms for Systems Biology in Tokyo.

The working group collaborated with a number of researchers at Physiome Sciences Inc. (particularly Melanie Nelson, Scott Lett, Mark Grehlinger, Prasad Ramakrishna, Jeremy Rice, Adam Muzikant, and Kam-Chuen Jim) to draft the initial CellML 1.0 specification, which was published on the 11th of August 2001. This first draft was followed by specifications for CellML Metadata and an update to CellML to accommodate structured nesting of models with the addition of the element. Physiome Sciences Inc. also produced the first CellML capable software. The National Resource for Cell Analysis and Modeling (NRCAM) at the University of Connecticut Health Center also produced early CellML capable software called Virtual Cell.

In 2002 the CellML 1.1 specification was written, in which imports were added. Imports provide the ability to incorporate external components into a model, enabling modular modelling. This specification was frozen in early 2006. Work has continued on metadata and other specifications.

In July 2009 the CellML website was completely revamped, and the an initial version of the new CellML repository software (PMR2) was released.