Quarter-finals
The first legs were played on 15 May and 22 May. The second legs were played on 29 May 2007.
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Johor FA | 4–1 | Kuala Muda Naza FC | 2–0 | 2–1 |
| Sabah FA | 2–5 | Perlis FA | 2–2 | 0–3 |
| UPB-MyTeam FC | 1–7 | Kedah FA | 1–4 | 0–3 |
| Selangor FA | 3–1 | Selangor PKNS | 2–1 | 1–1 |
Read more about this topic: 2007 Malaysia FA Cup