Resistance Mutation - Nomenclature

Nomenclature

Resistance mutations are conventionally listed as a letter, number and letter. For example, the M184V mutation in the reverse transcriptase gene of HIV confers resistance to the drugs lamivudine and emtricitabine. The letters stand for amino acids and use the traditional one letter abbreviations. M stands for methionine, and V stands for valine; 184 is the number of that amino acid position counting from the amino terminus of the protein. M184V means that the 184th amino acid of the protein is normally methionine, but that a mutation in the gene for that protein produces a form of the protein where that amino acid is substituted by valine instead.

The form V184 is sometimes seen; this means that the 184th amino acid of that protein is valine, but it gives no information as to whether that is a mutation or the normal state of affairs. The Greek capital letter delta Δ indicates a deletion: so ΔM184 would mean that the 184th amino acid is usually methionine, but that this position is now missing.

Alternatives are separated by slashes; so, M184V/I means "either M184V, or M184I".