Prediction of Ubiquitination
Currently available prediction programs are:
- UbiPred is a SVM-based prediction server using 31 physicochemical properties for predicting ubiquitylation sites.
- UbPred is a random forest-based predictor of potential ubiquitination sites in proteins. It was trained on a combined set of 266 non-redundant experimentally verified ubiquitination sites available from our experiments and from two large-scale proteomics studies.
- CKSAAP_UbSite is SVM-based prediction which employs the composition of k-spaced amino acid pairs surrounding a query site (i.e. any lysine in a query sequence) as input, usess the same dataset as UbPred.
Read more about this topic: Ubiquitin
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—Alison Clarke-Stewart (20th century)