Draft and Minor League Career
Lincecum was selected by the Chicago Cubs of the NL in the forty-eighth round (1,408th overall) of the 2003 MLB Draft, but did not sign. He decided to attend college instead, and was selected by the Cleveland Indians in the forty-second round (1,261st overall) upon re-entering the draft in 2005, but rejected an offer including a $700,000 signing bonus. The next year, he was drafted tenth overall by the San Francisco Giants, becoming the first player from the University of Washington to be taken in the first round. He signed for a $2.025 million signing bonus on June 30, which at the time was the most the organization had ever paid to any amateur player.
During his brief minor league career he was frequently named as the top pitching prospect in the Giants organization.
Lincecum made his professional debut on July 26, 2006, with the Salem-Keizer Volcanoes (the Giants' Class A Short Season affiliate) against the Vancouver Canadians, pitching one inning and striking out all three batters he faced. After his second outing on July 31 against the Boise Hawks, in which he pitched three innings, striking out seven and allowing just one baserunner, he was promoted to the High Class-A San Jose Giants.
On August 5, in his first start in San Jose against the Bakersfield Blaze, he pitched 2⅔ innings, allowing three runs (two earned), and striking out five. Lincecum finished the year 2–0 with a 1.95 ERA, 48 strikeouts, and 12 walks in 27⅔ innings pitched. He also got the victory in the opening game of the California League playoffs, giving up one run on five hits in seven innings, striking out ten and walking one against the Visalia Oaks. Visalia would win the series 3–2.
Going into 2007 Lincecum was ranked as the #1 prospect in baseball and the #1 prospect in the San Francisco Giants by Baseball America. He spent the first month of the season pitching for the Fresno Grizzlies, the Giants' Triple-A affiliate. In five starts (31 innings), he allowed just one run, twelve hits, eleven walks, while striking out forty-six and going 4–0. During his 2006 and 2007 minor league campaigns, Lincecum struck out the highest percentage of batters (minimum 100) of any minor league pitcher in the last ten years: 30.9 percent.
In the spring of 2007 Colorado Rockies prospect Ian Stewart called Lincecum "the toughest pitcher ever faced", adding "Guys on our club who have been in the big leagues said he's the toughest guy they ever faced too … I’m not really sure why he's down here, but for a guy who was drafted last year … that guy is filthy."
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