Alphabetically
- Bad River
- Belle Fourche River
- Big Sioux River
- Bois de Sioux River
- Castle Creek
- Cherry Creek
- Cheyenne River
- Elm River
- French Creek
- Grand River
- Indian River
- James River
- Jorgenson River
- Keya Paha River
- Lac qui Parle River, West Branch
- Little Minnesota River
- Little Missouri River
- Little Moreau River
- Little Vermillion River
- Little White River
- Maple River
- Missouri River
- Moreau River
- North Fork Grand River
- Owl Creek
- Rapid Creek
- Redwater River
- Skunk Creek
- South Fork Grand River
- Spearfish Creek
- Split Rock Creek
- Vermillion River
- Whetstone River
- White River
- Wounded Knee Creek
- Yellow Bank River, North Fork and South Fork
Read more about this topic: Rivers Of South Dakota