Apertura/Clausura Format (1999-present)
| Season | Champion | Runner-Up |
|---|---|---|
| Apertura 1998* | Alianza F.C. | L.A. Firpo |
| Clausura 1999 | L.A. Firpo | C.D. FAS |
| Apertura 1999 | C.D. Águila | C.D. Municipal Limeño |
| Clausura 2000 | L.A. Firpo | ADET |
| Apertura 2000 | C.D. Águila | C.D. Municipal Limeño |
| Clausura 2001 | C.D. Águila | C.D. FAS |
| Apertura 2001 | Alianza F.C. | L.A. Firpo |
| Clausura 2002 | C.D. FAS | Alianza F.C. |
| Apertura 2002 | C.D. FAS | San Salvador F.C. |
| Clausura 2003 | San Salvador F.C. | L.A. Firpo |
| Apertura 2003 | C.D. FAS | C.D. Águila |
| Clausura 2004 | Alianza F.C. | C.D. FAS |
| Apertura 2004 | C.D. FAS | C.D. Atlético Balboa |
| Clausura 2005 | C.D. FAS | L.A. Firpo |
| Apertura 2005 | C.D. Vista Hermosa | A.D. Isidro Metapán |
| Clausura 2006 | C.D. Águila | C.D. FAS |
| Apertura 2006 | Once Municipal | C.D. FAS |
| Clausura 2007 | A.D. Isidro Metapán | L.A. Firpo |
| Apertura 2007 | L.A. Firpo | C.D. FAS |
| Clausura 2008 | L.A. Firpo | C.D. FAS |
| Apertura 2008 | A.D. Isidro Metapán | C.D. Chalatenango |
| Clausura 2009 | A.D. Isidro Metapán | L.A. Firpo |
| Apertura 2009 | C.D. FAS | C.D. Águila |
| Clausura 2010 | A.D. Isidro Metapán | C.D. Águila |
| Apertura 2010 | A.D. Isidro Metapán | Alianza F.C. |
| Clausura 2011 | Alianza F.C. | C.D. FAS |
| Apertura 2011 | A.D. Isidro Metapán | Once Municipal |
| Clausura 2012 | C.D. Águila | A.D. Isidro Metapán |
| Apertura 2012 | A.D. Isidro Metapán | Alianza F.C. |
(*) The first winner of the shorter tournament has been deemed "Champion Cup", and the next, that of the Clausura 1999, as "champions". The First Division of El Salvador has not changed that status competition.
Read more about this topic: List Of Salvadoran Football Champions