S
- Schliersee
- Schwaltenweiher
- Schwarzensee (Berchtesgadener Land)
- Seehamer See
- Seeleinsee
- Seeon Lakes (Seeoner Seen)
- Simssee
- Soiernseen
- Soinsee
- Spitzingsee
- Staffelsee
- Lake Starnberg (Starnberger See)
- Steinberger See
- Steinsee
- Stempflesee
- Surtalsperre
- Sylvensteinspeicher
Read more about this topic: List Of Lakes In Bavaria