Heme B

Heme B or haem B (also known as protoheme IX) is the most abundant heme, both hemoglobin and myoglobin are examples of oxygen transport proteins that contain heme B. The peroxidase family of enzymes also contain heme B. The COX-1 and COX-2 enzymes (cyclooxygenase) of recent fame, also contain heme B at one of two active sites.

Generally, heme B is attached to the surrounding protein matrix (known as the apoprotein) through a single coordination bond between the heme iron and an amino-acid side-chain.

Both hemoglobin and myoglobin have a coordination bond to an evolutionarily-conserved histidine, while nitric oxide synthase and cytochrome P450 have a coordination bond to an evolutionarily-conserved cysteine bound to the iron center of heme B.

Since the iron in heme B containing proteins is bound to the four nitrogens of the porphyrin (forming a plane) and a single electron donating atom of the protein, the iron is often in a pentacoordinate state. When oxygen or the toxic carbon monoxide is bound the iron becomes hexacoordinated.

Enzyme cofactors
Active forms
vitamins
  • TPP / ThDP (B1)
  • FMN, FAD (B2)
  • NAD+, NADH, NADP+, NADPH (B3)
  • Coenzyme A (B5)
  • PLP / P5P (B6)
  • Biotin (B7)
  • THFA / H4FA, DHFA / H2FA, MTHF (B9)
  • AdoCbl, MeCbl (B12)
  • Ascorbic Acid (C)
  • Phylloquinone (K1), Menaquinone (K2)
  • Coenzyme F420
non-vitamins
  • ATP
  • CTP
  • SAMe
  • PAPS
  • GSH
  • Coenzyme B
  • Cofactor F430
  • Coenzyme M
  • Coenzyme Q
  • Heme / Haem (A, B, C, O)
  • Lipoic Acid
  • Methanofuran
  • Molybdopterin/Molybdenum cofactor
  • PQQ
  • THB / BH4
  • THMPT / H4MPT
minerals
  • Ca2+
  • Cu2+
  • Fe2+, Fe3+
  • Mg2+
  • Mn2+
  • Mo
  • Ni2+
  • Se
  • Zn2+
Base forms
  • vitamins: see vitamins

M: NUT

cof, enz, met

noco, nuvi, sysi/epon, met

drug (A8/11/12)

Types of tetrapyrroles
Bilanes
(Linear)
  • Bilirubin
  • Biliverdin
  • Stercobilinogen
  • Stercobilin
  • Urobilinogen
  • Urobilin
Phytobilins
  • Phytochromobilin
Phycobilins
  • Phycoerythrobilin
  • Phycocyanobilin
  • Phycourobilin
  • Phycoviolobilin
Macrocycle
Corrinoids
  • Methylcobalamin
  • Adenosylcobalamin
  • Cyanocobalamin
Porphyrins
Protoporphyrins
  • Protoporphyrin IX
  • Heme (b, c, a, o)
  • Zinc protoporphyrin
  • Magnesium protoporphyrin
Phytoporphyrins
  • Chlorophyll c1
  • Chlorophyll c2
  • Protochlorophyllide
Reduced
porphyrins
Porphyrinogens
  • Uroporphyrinogen (I, III)
  • Coproporphyrinogen (I, III)
  • Protoporphyrinogen IX
Chlorins
  • Chlorophyllide (a, b)
  • Chlorophyll (a, b)
  • Phaeophytin (a, b)
  • Bacteriochlorophyll c
Bacteriochlorins
  • Bacteriochlorophyll a
Isobacteriochlorins
  • Siroheme
  • Sirohydrochlorin
Corphins
  • Cofactor F430
  • biochemical families: carbohydrates
    • alcohols
    • glycoproteins
    • glycosides
  • lipids
    • eicosanoids
    • fatty acids / intermediates
    • phospholipids
    • sphingolipids
    • steroids
  • nucleic acids
    • constituents / intermediates
  • proteins
    • amino acids / intermediates
  • tetrapyrroles / intermediates