Overview
McQualter was raised in Traralgon, Victoria, and attended Gippsland Grammar School and later Caulfield Grammar School as a boarder along with future St Kilda teammate Brendon Goddard. McQualter and Goddard both captained the school's First XVIII football team and played in the First XI cricket side.
McQualter captained the Victorian Country Under-16 and Under-18 teams at the National Football Championships. He was injured for the 2004 National Carnival, meaning many AFL scouts didn't see him play during his final year of junior football. Nevertheless, he was selected by St Kilda 17th overall in the first round of the 2004 AFL Draft.
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