Structure
Sigma factors have four main regions that are generally conserved:
N-terminus --------------------- C-terminus 1.1 2 3 4
Sigma70 region 1.1 |
Identifiers |
Symbol |
Sigma70_r1_1 |
Pfam |
PF03979 |
InterPro |
IPR007127 |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
Sigma70 region 1.2 |
|
Crystal structure of Thermus aquaticus RNA polymerase sigma subunit fragment containing regions 1.2 to 3.1 |
Identifiers |
Symbol |
Sigma70_r1_2 |
Pfam |
PF00140 |
InterPro |
IPR009042 |
PROSITE |
PDOC00592 |
SCOP |
1sig |
SUPERFAMILY |
1sig |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
Sigma70 region 2 |
|
Crystal structure of a sigma70 subunit fragment from Escherichia coli RNA polymerase |
Identifiers |
Symbol |
Sigma70_r2 |
Pfam |
PF04542 |
Pfam clan |
CL0123 |
InterPro |
IPR007627 |
PROSITE |
PDOC00592 |
SCOP |
1sig |
SUPERFAMILY |
1sig |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
Sigma70 region 3 |
|
Solution structure of sigma a region 4 from Thermotoga maritima |
Identifiers |
Symbol |
Sigma70_r3 |
Pfam |
PF04539 |
Pfam clan |
CL0123 |
InterPro |
IPR007624 |
SCOP |
1ku2 |
SUPERFAMILY |
1ku2 |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
Sigma70_r4 |
|
Solution structure of sigma a region 4 from Thermotoga maritima |
Identifiers |
Symbol |
Sigma70_r4 |
Pfam |
PF04545 |
Pfam clan |
CL0123 |
InterPro |
IPR007630 |
SCOP |
1or7 |
SUPERFAMILY |
1or7 |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
Sigma70 region 4.2 |
|
Crystal structure of Escherichia coli sigma e region 4 bound to its -35 element DNA |
Identifiers |
Symbol |
Sigma70_r4_2 |
Pfam |
PF08281 |
Pfam clan |
CL0123 |
InterPro |
IPR013249 |
SCOP |
1or7 |
SUPERFAMILY |
1or7 |
Available protein structures: |
Pfam |
structures |
PDB |
RCSB PDB; PDBe |
PDBsum |
structure summary |
|
The regions are further subdivided (e.g. 2 includes 2.1, 2.2, etc.)
- Region 1.1 is found only in "primary sigma factors" (RpoD, RpoS in E.coli). It is involved in ensuring the sigma factor will only bind the promoter when it is complexed with the RNA polymerase.
- Region 2.4 recognizes and binds to the promoter -10 element (formerly called "Pribnow box").
- Region 4.2 recognizes and binds to the promoter -35 element.
One exception to this organization is in σ54-type sigma factors. Proteins homologous to σ54/RpoN are functional sigma factors, but they have significantly different primary amino acid sequences.