Year-by-year
| Year | Division | League | Reg. Season | Playoffs | Open Cup |
|---|---|---|---|---|---|
| 2002 | 3 | USL D-3 Pro League | 2nd, Western | Quarterfinals | 2nd Round |
| 2003 | 3 | USL Pro Select League | 3rd, Western | Did not qualify | Did not qualify |
| 2004 | 3 | USL Pro Soccer League | 2nd, Western | Quarterfinals | 2nd Round |
| 2005 | 4 | USL PDL | 8th, Southwest | Did not qualify | Did not qualify |
| 2006 | 4 | USL PDL | 8th, Southwest | Did not qualify | Did not qualify |
Read more about this topic: San Diego Gauchos