- Dahlia mosaic virus
- Dakar bat virus
- Dandelion latent virus
- Dandelion yellow mosaic virus
- Daphne mosaic virus
- Daphne virus S
- Daphne virus X
- Darna trima virus
- Dasheen mosaic virus
- Dasychira pudibunda virus
- Datura shoestring virus
- Datura yellow vein virus
- Deer papillomavirus
- Defective virus
- Deformed wing virus
- Deformed wing virus DWV
- Deltapapillomavirus 1
- Deltapapillomavirus 2
- Deltapapillomavirus 3
- Deltapapillomavirus 4
- Deltapapillomavirus 5
- Deltaretrovirus
- Demodema boranensis entomopoxvirus
- Dendrolimus punctatus virus
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- Dengue
- Dengue virus
- Densovirus
- Dependovirus
- Dera Ghazi Khan virus
- Dermolepida albohirtum entomopoxvirus
- Desmodium leaf distortion virus
- Desmodium yellow mottle virus
- Dhori virus
- Diachasmimorpha entomopoxvirus
- Diadegma acronyctae ichnovirus
- Diadegma interruptum ichnovirus
- Diadegma terebrans ichnovirus
- Diadromus pulchellus ascovirus 4a
- Dianthovirus
- Dicliptera yellow mottle Cuba virus
- Dicliptera yellow mottle virus
- Dictyostelium discoideum Skipper virus
- Digitaria streak virus
- Diolcogaster facetosa bracovirus
- Dioscorea bacilliform AL virus
- Dioscorea bacilliform SN virus
- Diplorna virus
- Discula destructiva virus 1
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- Discula destructiva virus 2
- Diuris virus Y
- DNA virus
- Dobrava-Belgrade virus
- Dolichos yellow mosaic virus
- Dolphin poxvirus (DOV)
- Drosophila ananassae Tom virus
- Drosophila buzzatii Osvaldo virus
- Drosophila C virus
- Drosophila melanogaster 17.6 virus
- Drosophila melanogaster 297 virus
- Drosophila melanogaster 412 virus
- Drosophila melanogaster 1731 virus
- Drosophila melanogaster Bel virus
- Drosophila melanogaster Blastopia virus
- Drosophila melanogaster copia virus
- Drosophila melanogaster Gypsy virus
- Drosophila melanogaster Idefix virus
- Drosophila melanogaster Mdg1 virus
- Drosophila melanogaster Mdg3 virus
- Drosophila melanogaster Micropia virus
- Drosophila melanogaster Roo virus
- Drosophila melanogaster Tirant virus
- Drosophila melanogaster Zam virus
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- Drosophila simulans Ninja virus
- Drosophila virilis Tv1 virus
- Drosophila virilis Ulysses virus
- Drosophila X virus
- Duck adenovirus A
- Duck circovirus
- Duck hepatitis A virus
- Duck hepatitis B virus
- duck hepatitis virus 1
- Duck hepatitis virus 2
- Duck parvovirus
- Dugbe virus
- Dulcamara mottle virus
- Duovirus
- Duvenhage virus
- Dyodeltapapillomavirus 1
- Dyoepsilonpapillomavirus 1
- Dyoetapapillomavirus 1
- Dyoiotapapillomavirus 1
- Dyothetapapillomavirus 1
- Dyozetapapillomavirus 1
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