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- Sackets Harbor (Jefferson County)
- Saddle Rock (Nassau County)
- Sag Harbor (Suffolk County)
- Sagaponack (Suffolk County)
- St. Johnsville (Montgomery County)
- Salem (Washington County)
- Saltaire (Suffolk County)
- Sands Point (Nassau County)
- Sandy Creek (Oswego County)
- Saranac Lake (Franklin County and Essex County)
- Saugerties (Ulster County)
- Savona (Steuben County)
- Scarsdale (Westchester County)
- Schaghticoke (Rensselaer County)
- Schoharie (Schoharie County)
- Schuylerville (Saratoga County)
- Scotia (Schenectady County)
- Scottsville (Monroe County)
- Sea Cliff (Nassau County)
- Sharon Springs (Schoharie County)
- Sherburne (Chenango County)
- Sherman (Chautauqua County)
- Shoreham (Suffolk County)
- Shortsville (Ontario County)
- Sidney (Delaware County)
- Silver Creek (Chautauqua County)
- Silver Springs (Wyoming County)
- Sinclairville (Chautauqua County)
- Skaneateles (Onondaga County)
- Sleepy Hollow (Westchester County)
- Sloan (Erie County)
- Sloatsburg (Rockland County)
- Smyrna (Chenango County)
- Sodus (Wayne County)
- Sodus Point (Wayne County)
- Solvay (Onondaga County)
- South Blooming Grove (Orange County)
- South Corning (Steuben County)
- South Dayton (Cattaraugus County)
- South Floral Park (Nassau County)
- South Glens Falls (Saratoga County)
- South Nyack (Rockland County)
- Southampton (Suffolk County)
- Speculator (Hamilton County)
- Spencer (Tioga County)
- Spencerport (Monroe County)
- Spring Valley (Rockland County)
- Springville (Erie County)
- Stamford (Delaware County)
- Stewart Manor (Nassau County)
- Stillwater (Saratoga County)
- Suffern (Rockland County)
- Sylvan Beach (Oneida County)
Read more about this topic: List Of Villages In New York