Threading/fold Recognition
Name | Method | Description | Link |
---|---|---|---|
RaptorX | Remote template detection, single-template and multi-template threading, totally different from and much better than the old program RAPTOR designed by the same group | Webserver with job manager, automatically updated fold library | download server |
3D-PSSM | 3D-1D sequence profiling (replaced by Phyre) | Webserver | server |
Bioingbu | Evolutionary information recognition | Webserver | server |
HHpred | Template detection, alignment, 3D modeling | Interactive webserver with help facility | server download article |
I-TASSER | Combination of ab initio folding and threading methods | Structural and function predictions | server
download |
LOOPP | Multiple methods | Webserver | server |
mGenTHREADER/GenTHREADER | Sequence profile and predicted secondary structure | Webserver | main page |
MUSTER | profile-profile alignment | Webserver | server
download |
Phyre and Phyre2 | Remote template detection, alignment, 3D modeling, multi-templates, ab initio | Webserver with job manager, automatically updated fold library, genome searching and other facilities | server |
RAPTOR | Integer programming based fold recognition | Free demo | download articles |
Selvita Protein Modeling Platform | Package of tools for protein modeling | Free demo, interactive webserver and standalone program including: 3D threading and flexible 3d threading | Home page |
SUPERFAMILY | Hidden Markov modeling | Webserver/standalone | main page |
SPARKSx/SP series | 3D structure modeling by Fold recognition according to Sequence profiles and structural profiles | Webserver | Server |
Read more about this topic: List Of Protein Structure Prediction Software
Famous quotes containing the words threading, fold and/or recognition:
“Tell me how many beads there are
In a silver chain
Of evening rain,
Unravelled from the tumbling main,
And threading the eye of a yellow star:
So many times do I love again.”
—Thomas Lovell Beddoes (18031849)
“And they both went a walking to Blackberry Fold.”
—Unknown. Squire and Milkmaid; or, Blackberry Fold (l. 20)
“The recognition of Russia on November 16, 1933, started forces which were to have considerable influence in the attempt to collectivize the United States.”
—Herbert Hoover (18741964)