Ab Initio Structure Prediction
| Name | Method | Description | Link |
|---|---|---|---|
| QUARK | Monte Carlo fragment assembly | On-line server for protein modeling (best for ab initio folding in CASP9) | Server |
| I-TASSER | Threading fragement structure reassembly | On-line server for protein modeling | Server
download |
| Selvita Protein Modeling Platform | Package of tools for protein modeling | Interactive webserver and standalone program including: CABS ab initio modeling | Home page |
| ROBETTA | Rosetta homology modeling and ab initio fragment assembly with Ginzu domain prediction | Webserver | server |
| Rosetta@home | Distributed-computing implementation of Rosetta algorithm | Downloadable program | main page |
| CABS | Reduced modeling tool | Downloadable program | download |
| Bhageerath | A computational protocol for modeling and predicting protein structures at the atomic level. | Webserver | Server |
| Abalone | Molecular Dynamics folding | Program | Example |
| PEP-FOLD | De novo approach, based on a HMM structural alphabet | On-line server for peptide structure prediction | Server |
Read more about this topic: List Of Protein Structure Prediction Software
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