- Islands of Indonesia
- Adonara
- Alor
- Alor Archipelago
- Ambon Island
- Anambas
- Aru
- Aru Islands
- Babar Island
- Bacan
- Bali
- Banda Islands
- Bangka Island
- Banyak Islands
- Barat Daya Islands
- Batam
- Batu Islands
- Bawean
- Belitung
- Bengkalis
- Biak
- Borneo
- Bunaken
- Buru
- Buton
- Derawan Islands
- Flores
- Galang Island
- Gili Air
- Gili Islands
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- Gili Meno
- Gili Motang
- Gili Trawangan
- Greater Sunda Islands
- Halmahera
- Java
- Kai Islands
- Kakaban
- Kalimantan
- Kangean Islands
- Karimata islands
- Karimun
- Kangean Islands
- Kisar
- Komodo (island)
- Krakatoa
- Lang Island
- Lembata
- Lesser Sunda Islands
- Leti Island
- Lingga Islands
- Liran
- Lombok
- Madura Island
- Maluku Islands
- Mangole Island
- Mentawai Islands
- Morotai
- Muna Island
- Natuna Islands
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- New Guinea
- Nias
- North Pagai
- Kambangan Island
- Nusa Penida
- Obi Islands
- Obira
- Palu'e
- Pantar
- Pasaran
- Pasumpahan
- Peleng
- Poolsche Hoed
- Rakata
- Riau Islands
- Rincah
- Romang
- Rote Island
- Run (island)
- Samosir
- Sanana Island
- Sangihe Islands
- Sangir
- Saparua
- Savu
- Schouten Islands
- Selayar Islands
- Seram
- Serua (volcano)
- Siau
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- Siberut
- Simeulue
- Sipura
- Solor
- Solor Archipelago
- Spice Islands
- Sulawesi
- Sumatra
- Sumba
- Sumbawa
- Sunda Islands
- Talaud Islands
- Taliabu
- Tanimbar Islands
- Tarakan
- Ternate
- Thousand Islands (Indonesia)
- Tidore
- Timor
- Togian Islands
- Tuangku
- Utara
- Waigeo
- Wakde
- Wetar
- Yamdena
- Yapen
- Yos Sudarso Island
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