Awards and Nominations
| Year | Award | Organization | Work | Category | Result |
|---|---|---|---|---|---|
| 1997 | Special Jury Prize | Sundance Film Festival | SICK: The Life & Death of Bob Flanagan, Supermasochist | Documentary Feature | Won |
| Grand Prize | Los Angeles Film Festival | Documentary Feature | Won | ||
| 2001 | Grand Jury Prize | Sundance Film Festival | Chain Camera | Documentary | Nominated |
| 2002 | Golden Gate Award | San Francisco Film Festival | Derrida | Documentary Feature | Won |
| Grand Jury Prize | Sundance Film Festival | Documentary | Nominated | ||
| 2005 | Academy Award | Academy of Motion Picture Arts and Sciences | Twist of Faith | Best Documentary | Nominated |
| Grand Jury Prize | Sundance Film Festival | Documentary | Nominated | ||
| 2006 | Austin Film Critics Award | Austin Film Critics Association | This Film Is Not Yet Rated | Best Documentary | Won |
| Critics Choice Award | Broadcast Film Critics Association | Best Documentary Feature | Nominated | ||
| 2007 | Chlotrudis Award | Chlotrudis Society for Independent Film | Best Documentary | Won | |
| Golden Trailer Award | Golden Trailer Awards | Best Documentary | Won | ||
| GLAAD Media Award | Gay & Lesbian Alliance Against Defamation | Outstanding Documentary | Nominated | ||
| 2009 | Jury Award | Miami Gay and Lesbian Film Festival | Outrage | Best Documentary | Won |
| 2010 | Emmy Award | National Academy of Television Arts and Sciences | Outstanding Investigative Journalism: Long Form | Nominated | |
| 2012 | Audience Award | Sundance Film Festival | The Invisible War | Best Documentary | Won |
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