HLA-DQ7 - Haplotypes

Haplotypes

HLA DQA1*03:DQB1*0301 frequencies
freq
ref. Population (%)
Chukotka Chukchi (Siberia) 26.7
Chukotka Eskimos (Siberia) 25.0
Koryaks (NE Kamchatka, Siberia) 19.1
Polygus Evenks (Siberia) 11.4
Khalkh (Ulaanbaatar, Mongolia) 11.0
Negidal (Siberia) 9.6
Kushun Buryat (Siberia) 8.0
Tarialan Khoton (Mongolia) 7.8
France Ceph 6.0
Russia Tuva (2) 6.0
Udegeys Gvaysugi (Siberia) 4.8
Irkutsk Tofalar (Siberia ) 4.7
Ulchi (Siberia) 4.1
Belgian pop2 4.1
England Caucasoid 4.0
Italy pop 2 2.8
Russia Tuva Todja 2.3
China Ürümqi Kazak 2.4
Sulamai Kets (Siberia) 2.3
Russia Siberia Nganasan Dudinka 2.1
NW Slavic Russia 2.0
Japan Fukuoka 1.2
Japan (2) 1.1

DQ haplotypes of this serotype are formed between the cis-chromosomal genes of the DQA1 locus. This includes DQA1*0301, *0302, *0303, *0401, *0505, *0601.

There is a rather large degree of disequilibration about DQA1*0301 suggesting that this is one of the older and more established HLA DQB1* alleles in Eurasia. The intron structure of DQB1 suggest that DQB1*0301 DQB1*0302/*0303 split occurred before DQB1*0302/*0303, the distribution of *03 in Africa suggest that recombination DQA1*03:DQB1*0301 are primarily the result of recombination events that have occurred in Africa. A recent study of myasthenia gravis in Houston confirms the presence of A*0505:B*0301 in Nigeria. B1*0301 and A1*03 haplotypes are found at relatively high frequencies in SE Asia and Austronesia, also indicating that it is well established in the exo-African population.

Read more about this topic:  HLA-DQ7