Software
Software supporting BioPAX include:
- Paxtools, a Java API for handling BioPAX files
- Systems Biology Linker (Sybil), an application for visualizing BioPAX and converting BioPAX to SBML, as part of the Virtual Cell.
- ChiBE (Chisio BioPAX Editor), an application for visualizing and editing BioPAX.
- BioPAX Validator - syntax and semantic rules and best practices (project wiki)
- Cytoscape includes a BioPAX reader and other extensions, such as PathwayCommons plugin and CyPath2 app.
- BiNoM, a cytoscape plugin for network analysis, with functions to import and export BioPAX level 3 files.
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