In the alternate future of X-Men: The End, Wolverine is caring for a crippled Storm and has given up his life as an X-Man. However after being attacked by a Warskrull, Wolverine and Storm return to the X-Men only to find a crater where the mansion stood. Wolverine along with Rachel Summers, X-23 and a few others were sent to find out what happened to Cable and his team. Wolverine and Jean Grey/Phoenix meet up again. Jean helps Logan break free of the Lady Mastermind and later helps him heal.
Read more about this topic: Alternative Versions Of Wolverine